http://hl7.org/fhir/StructureDefinition/MolecularSequence|4.0.1

Raw data describing a biological sequence.

Structure JSON Dependencies FHIRSchema Other Versions Dependant (0)Elements Summary

element_id	types
MolecularSequence
MolecularSequence.identifier	Identifier
MolecularSequence.type	code
MolecularSequence.coordinateSystem	integer
MolecularSequence.patient	Reference
MolecularSequence.specimen	Reference
MolecularSequence.device	Reference
MolecularSequence.performer	Reference
MolecularSequence.quantity	Quantity
MolecularSequence.referenceSeq	BackboneElement
MolecularSequence.referenceSeq.chromosome	CodeableConcept
MolecularSequence.referenceSeq.genomeBuild	string
MolecularSequence.referenceSeq.orientation	code
MolecularSequence.referenceSeq.referenceSeqId	CodeableConcept
MolecularSequence.referenceSeq.referenceSeqPointer	Reference
MolecularSequence.referenceSeq.referenceSeqString	string
MolecularSequence.referenceSeq.strand	code
MolecularSequence.referenceSeq.windowStart	integer
MolecularSequence.referenceSeq.windowEnd	integer
MolecularSequence.variant	BackboneElement
MolecularSequence.variant.start	integer
MolecularSequence.variant.end	integer
MolecularSequence.variant.observedAllele	string
MolecularSequence.variant.referenceAllele	string
MolecularSequence.variant.cigar	string
MolecularSequence.variant.variantPointer	Reference
MolecularSequence.observedSeq	string
MolecularSequence.quality	BackboneElement
MolecularSequence.quality.type	code
MolecularSequence.quality.standardSequence	CodeableConcept
MolecularSequence.quality.start	integer
MolecularSequence.quality.end	integer
MolecularSequence.quality.score	Quantity
MolecularSequence.quality.method	CodeableConcept
MolecularSequence.quality.truthTP	decimal
MolecularSequence.quality.queryTP	decimal
MolecularSequence.quality.truthFN	decimal
MolecularSequence.quality.queryFP	decimal
MolecularSequence.quality.gtFP	decimal
MolecularSequence.quality.precision	decimal
MolecularSequence.quality.recall	decimal
MolecularSequence.quality.fScore	decimal
MolecularSequence.quality.roc	BackboneElement
MolecularSequence.quality.roc.score	integer
MolecularSequence.quality.roc.numTP	integer
MolecularSequence.quality.roc.numFP	integer
MolecularSequence.quality.roc.numFN	integer
MolecularSequence.quality.roc.precision	decimal
MolecularSequence.quality.roc.sensitivity	decimal
MolecularSequence.quality.roc.fMeasure	decimal
MolecularSequence.readCoverage	integer
MolecularSequence.repository	BackboneElement
MolecularSequence.repository.type	code
MolecularSequence.repository.url	uri
MolecularSequence.repository.name	string
MolecularSequence.repository.datasetId	string
MolecularSequence.repository.variantsetId	string
MolecularSequence.repository.readsetId	string
MolecularSequence.pointer	Reference
MolecularSequence.structureVariant	BackboneElement
MolecularSequence.structureVariant.variantType	CodeableConcept
MolecularSequence.structureVariant.exact	boolean
MolecularSequence.structureVariant.length	integer
MolecularSequence.structureVariant.outer	BackboneElement
MolecularSequence.structureVariant.outer.start	integer
MolecularSequence.structureVariant.outer.end	integer
MolecularSequence.structureVariant.inner	BackboneElement
MolecularSequence.structureVariant.inner.start	integer
MolecularSequence.structureVariant.inner.end	integer
MolecularSequence
MolecularSequence.id	http://hl7.org/fhirpath/System.String
MolecularSequence.meta	Meta
MolecularSequence.implicitRules	uri
MolecularSequence.language	code
MolecularSequence.text	Narrative
MolecularSequence.contained	Resource
MolecularSequence.extension	Extension
MolecularSequence.modifierExtension	Extension
MolecularSequence.identifier	Identifier
MolecularSequence.type	code
MolecularSequence.coordinateSystem	integer
MolecularSequence.patient	Reference
MolecularSequence.specimen	Reference
MolecularSequence.device	Reference
MolecularSequence.performer	Reference
MolecularSequence.quantity	Quantity
MolecularSequence.referenceSeq	BackboneElement
MolecularSequence.referenceSeq.id	http://hl7.org/fhirpath/System.String
MolecularSequence.referenceSeq.extension	Extension
MolecularSequence.referenceSeq.modifierExtension	Extension
MolecularSequence.referenceSeq.chromosome	CodeableConcept
MolecularSequence.referenceSeq.genomeBuild	string
MolecularSequence.referenceSeq.orientation	code
MolecularSequence.referenceSeq.referenceSeqId	CodeableConcept
MolecularSequence.referenceSeq.referenceSeqPointer	Reference
MolecularSequence.referenceSeq.referenceSeqString	string
MolecularSequence.referenceSeq.strand	code
MolecularSequence.referenceSeq.windowStart	integer
MolecularSequence.referenceSeq.windowEnd	integer
MolecularSequence.variant	BackboneElement
MolecularSequence.variant.id	http://hl7.org/fhirpath/System.String
MolecularSequence.variant.extension	Extension
MolecularSequence.variant.modifierExtension	Extension
MolecularSequence.variant.start	integer
MolecularSequence.variant.end	integer
MolecularSequence.variant.observedAllele	string
MolecularSequence.variant.referenceAllele	string
MolecularSequence.variant.cigar	string
MolecularSequence.variant.variantPointer	Reference
MolecularSequence.observedSeq	string
MolecularSequence.quality	BackboneElement
MolecularSequence.quality.id	http://hl7.org/fhirpath/System.String
MolecularSequence.quality.extension	Extension
MolecularSequence.quality.modifierExtension	Extension
MolecularSequence.quality.type	code
MolecularSequence.quality.standardSequence	CodeableConcept
MolecularSequence.quality.start	integer
MolecularSequence.quality.end	integer
MolecularSequence.quality.score	Quantity
MolecularSequence.quality.method	CodeableConcept
MolecularSequence.quality.truthTP	decimal
MolecularSequence.quality.queryTP	decimal
MolecularSequence.quality.truthFN	decimal
MolecularSequence.quality.queryFP	decimal
MolecularSequence.quality.gtFP	decimal
MolecularSequence.quality.precision	decimal
MolecularSequence.quality.recall	decimal
MolecularSequence.quality.fScore	decimal
MolecularSequence.quality.roc	BackboneElement
MolecularSequence.quality.roc.id	http://hl7.org/fhirpath/System.String
MolecularSequence.quality.roc.extension	Extension
MolecularSequence.quality.roc.modifierExtension	Extension
MolecularSequence.quality.roc.score	integer
MolecularSequence.quality.roc.numTP	integer
MolecularSequence.quality.roc.numFP	integer
MolecularSequence.quality.roc.numFN	integer
MolecularSequence.quality.roc.precision	decimal
MolecularSequence.quality.roc.sensitivity	decimal
MolecularSequence.quality.roc.fMeasure	decimal
MolecularSequence.readCoverage	integer
MolecularSequence.repository	BackboneElement
MolecularSequence.repository.id	http://hl7.org/fhirpath/System.String
MolecularSequence.repository.extension	Extension
MolecularSequence.repository.modifierExtension	Extension
MolecularSequence.repository.type	code
MolecularSequence.repository.url	uri
MolecularSequence.repository.name	string
MolecularSequence.repository.datasetId	string
MolecularSequence.repository.variantsetId	string
MolecularSequence.repository.readsetId	string
MolecularSequence.pointer	Reference
MolecularSequence.structureVariant	BackboneElement
MolecularSequence.structureVariant.id	http://hl7.org/fhirpath/System.String
MolecularSequence.structureVariant.extension	Extension
MolecularSequence.structureVariant.modifierExtension	Extension
MolecularSequence.structureVariant.variantType	CodeableConcept
MolecularSequence.structureVariant.exact	boolean
MolecularSequence.structureVariant.length	integer
MolecularSequence.structureVariant.outer	BackboneElement
MolecularSequence.structureVariant.outer.id	http://hl7.org/fhirpath/System.String
MolecularSequence.structureVariant.outer.extension	Extension
MolecularSequence.structureVariant.outer.modifierExtension	Extension
MolecularSequence.structureVariant.outer.start	integer
MolecularSequence.structureVariant.outer.end	integer
MolecularSequence.structureVariant.inner	BackboneElement
MolecularSequence.structureVariant.inner.id	http://hl7.org/fhirpath/System.String
MolecularSequence.structureVariant.inner.extension	Extension
MolecularSequence.structureVariant.inner.modifierExtension	Extension
MolecularSequence.structureVariant.inner.start	integer
MolecularSequence.structureVariant.inner.end	integer