http://hl7.org/fhir/StructureDefinition/MolecularSequence|5.0.0

Representation of a molecular sequence.

Structure JSON Dependencies FHIRSchema Other Versions Dependant (0)Elements Summary

Name	Flags	Card	Type	Description & Constraints
MolecularSequence		0..*		Representation of a molecular sequence
identifier	Σ	0..*	Identifier	Unique ID for this particular sequence
type	Σ	0..1	code	aa \| dna \| rna sequenceType (required)
subject	Σ	0..1	Reference	Subject this sequence is associated too
focus	Σ	0..*	Reference	What the molecular sequence is about, when it is not about the subject of record
specimen	Σ	0..1	Reference	Specimen used for sequencing
device	Σ	0..1	Reference	The method for sequencing
performer	Σ	0..1	Reference	Who should be responsible for test result
literal	Σ	0..1	string	Sequence that was observed
formatted	Σ	0..*	Attachment	Embedded file or a link (URL) which contains content to represent the sequence
relative	Σ	0..*	BackboneElement	A sequence defined relative to another sequence
coordinateSystem *	Σ	1..1	CodeableConcept	Ways of identifying nucleotides or amino acids within a sequence LL5323-2 (extensible)
ordinalPosition		0..1	integer	Indicates the order in which the sequence should be considered when putting multiple 'relative' elements together
sequenceRange		0..1	Range	Indicates the nucleotide range in the composed sequence when multiple 'relative' elements are used together
startingSequence	Σ	0..1	BackboneElement	A sequence used as starting sequence
genomeAssembly	Σ	0..1	CodeableConcept	The genome assembly used for starting sequence, e.g. GRCh38 LL1040-6 (extensible)
chromosome	Σ	0..1	CodeableConcept	Chromosome Identifier LL2938-0 (required)
sequence[x]	Σ	0..1		The reference sequence that represents the starting sequence Multiple bindings acceptable (NCBI or LRG) (example)
sequenceCodeableConcept	Σ	0..1	CodeableConcept	Multiple bindings acceptable (NCBI or LRG) (example)
sequenceString	Σ	0..1	string	Multiple bindings acceptable (NCBI or LRG) (example)
sequenceReference	Σ	0..1	Reference	Multiple bindings acceptable (NCBI or LRG) (example)
windowStart	Σ	0..1	integer	Start position of the window on the starting sequence
windowEnd	Σ	0..1	integer	End position of the window on the starting sequence
orientation	Σ	0..1	code	sense \| antisense orientationType (required)
strand	Σ	0..1	code	watson \| crick strandType (required)
edit	Σ	0..*	BackboneElement	Changes in sequence from the starting sequence
start	Σ	0..1	integer	Start position of the edit on the starting sequence
end	Σ	0..1	integer	End position of the edit on the starting sequence
replacementSequence	Σ	0..1	string	Allele that was observed
replacedSequence	Σ	0..1	string	Allele in the starting sequence