http://hl7.org/fhir/genomicstudy-dataformat|5.0.0
name
GenomicStudyDataFormat
GenomicStudyDataFormat
package
hl7.fhir.r5.core@5.0.0
hl7.fhir.r5.core@5.0.0
content
complete
complete
experimental
true
true
status
active
active
date
2022-08-17 19:49:24.0
2022-08-17 19:49:24.0
Genomic Study Data Format
The data format relevant to genomics. These formats and relevant codes were pulled from [Integrative Genomics Viewer Documentation](https://software.broadinstitute.org/software/igv/FileFormats) by Broad Institute.
| code | display | definition | hierarchy |
|---|---|---|---|
| bam | BAM | ||
| bed | BED | ||
| bedpe | BEDPE | ||
| bedgraph | BedGraph | ||
| bigbed | bigBed | ||
| bigWig | bigWig | ||
| birdsuite-files | Birdsuite-Files | ||
| broadpeak | broadPeak | ||
| cbs | CBS | ||
| chemical-reactivity-probing-profiles | Chemical-Reactivity-Probing-Profiles | ||
| chrom-sizes | chrom-sizes | ||
| cn | CN | ||
| custom-file-formats | Custom-File-Formats | ||
| cytoband | Cytoband | ||
| fasta | FASTA | ||
| gct | GCT | ||
| cram | CRAM | ||
| genepred | genePred | ||
| gff-gtf | GFF/GTF | ||
| gistic | GISTIC | ||
| goby | Goby | ||
| gwas | GWAS | ||
| igv | IGV | ||
| loh | LOH | ||
| maf-multiple-alignment-format | MAF-Multiple Alignment Format | ||
| maf-mutation-annotation-format | MAF-Mutation-Annotation-Format | ||
| merged-bam-file | Merged BAM File | ||
| mut | MUT | ||
| narrowpeak | narrowPeak | ||
| psl | PSL | ||
| res | RES | ||
| rna-secondary-structure-formats | RNA-Secondary-Structure-Formats | ||
| sam | SAM | ||
| sample-info-attributes-file | Sample-Info-Attributes-file | ||
| seg | SEG | ||
| tdf | TDF | ||
| track-line | Track Line | ||
| type-line | Type Line | ||
| vcf | VCF | ||
| wig | WIG |